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Dipeptide binding

Een peptidebinding is een chemische binding tussen een carboxylgroep (-COOH) en een aminogroep (-NH2). Hierdoor kunnen twee of meer aminozuren zich verbinden tot een peptide (keten van aminozuren). De binding ontstaat tussen de carboxylgroep (-COOH) van één aminozuur en de aminogroep (-NH2) van een volgend aminozuur These proteins serve as initial receptors for active transport systems or permeases. About six of these proteins, including the dipeptide-binding protein (DppA), are also primary receptors for chemotaxis. The structure of the unbound form of DppA (M(r) = 57,400) has been determined and refined to an R-factor of 0.169 to 2 A resolution A new dipeptide receptor 9, which was designed de novo based on theoretical calculations, efficiently binds dipeptides in water with Kass > 104 M-1 by a combination of ion pairing and hydrogen bonds as can be shown by UV-titration and NMR experiments

The dipeptide GL held the F pocket open, similar to FAPGNYPAL, suggesting a mechanism for increasing the peptide binding affinity of K b (Fig. 4A, dark blue structure). No such effect was observed on the A/B or the C pocket regions, which are further removed from the F pocket, the hypothesized binding site of the dipeptide ( Fig. 4 C , Left ) The Escherichia coli periplasmic dipeptide binding protein functions in both peptide transport and taxis toward peptides. The structure of the dipeptide binding protein in complex with Gly-Leu (glycyl-L-leucine) has been determined at 3.2 A resolution As expected, binding to dsDNA is the most common for dipeptides containing positively charged amino acids from the group # 5 due to dsDNA being negatively charged. Non-selective DNA binding of poly-Arg + and poly-Lys + has been observed experimentally Sigma-Aldrich offers abstracts and full-text articles by [J W Anderson, R F Pratt]

Peptidebinding - Wikipedi

  1. i (Cetinel et al., 2013) or within the permissive sites of the functional protein (Dai et al., 2005), followed by the cloning of the fusion protein encoding the DNA fragment into an expression plasmid vector system
  2. Nucleotide-binding oligomerization domain-containing protein 2 (NOD2), also known as caspase recruitment domain-containing protein 15 (CARD15) or inflammatory bowel disease protein 1 (IBD1), is a protein that in humans is encoded by the NOD2 gene located on chromosome 16. NOD2 plays an important role in the immune system.It recognizes bacterial molecules (peptidoglycans) and stimulates an.
  3. Dipeptide transport ATP-binding protein DppF Add BLAST: 334: Proteomic databases. jPOST i: P37313: PaxDb i: P37313 PRIDE i: P37313: Interaction i Protein-protein interaction databases. BioGRID i: 4259468, 339 interactors 852364, 3 interactors: ComplexPortal i: CPX-4345, Heme/dipeptide ABC.
  4. Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation
  5. osyrer, fra den ene a
  6. Abstract The Escherichia coli periplasmic dipeptide binding protein functions in both peptide transport and taxis toward peptides. The structure of the dipeptide binding protein in complex with Gly..
  7. Binding of the export receptor CRM1 to R-rich DPRs could not be detected, likely because its concentration in HeLa cytosol was too low (data not shown). Download : Download high-res image (364KB) Download : Download full-size image; Figure 1. Importins Bind Directly to Arginine-Rich Dipeptide Repeat Proteins (DPRs

Bacterial dipeptide ABC transporters function to import a wide range of dipeptide substrates. This ability to transport a wide variety of dipeptides is conferred by the cognate substrate binding protein (SBP) of these transporters. SBPs bind dipeptides. The human intestinal oligopeptide transporter (PEPT1) facilitates the absorption of dipeptides, tripeptides, and many peptidomimetic drugs. In this study, a large number of peptides were selected to investigate the structural features required for PEPT1 transport. Binding affinity was determined in a Gly-Sar uptake inhibition assay, whereas functional transport was ranked in a membrane. Translocase is a general term for a protein that assists in moving another molecule, usually across a cell membrane. These enzymes catalyze the movement of ions or molecules across membranes or their separation within membranes. The reaction is designated as a transfer from side 1 to side 2 because the designations in and out, which had previously been used, can be. Collagen-derived dipeptide prolyl hydroxyproline (Pro-Hyp) is involved in the proliferation and differentiation of various types of cultured cells. To elucidate the mechanism underlying Pro-Hyp actions during osteoblast differentiation, we hypothesized that proteins binding to Pro-Hyp serve to media DOI: 10.1021/JM0511029 Corpus ID: 23822983. Human PEPT1 pharmacophore distinguishes between dipeptide transport and binding. @article{Vig2006HumanPP, title={Human PEPT1 pharmacophore distinguishes between dipeptide transport and binding.}, author={B. Vig and T. Stouch and J. Timoszyk and Y. Quan and D. Wall and R. Smith and Teresa N. Faria}, journal={Journal of medicinal chemistry}, year={2006.

Abstract: Dipeptide 4 containing two unnatural amino acids, a modified tyrosine and a phenanthridine derivative, was synthesized. Binding of the dipeptide to a series of polynucleotides including ct -DNA, poly A - poly U, poly (dAdT) 2, poly dG - poly dC and poly (dGdC) 2 was investigate Protein Dipeptide-binding protein from c.94.1.1: Phosphate binding protein-like appears in the current release, SCOPe 2.07. SCOPe: Structural Classification of Proteins — extended. Release 2.05 (updated 2016-01-14, stable release February 2015

dipeptide-binding protein Number of proteins 16 Functional status of component genes: 0 gold (experimental evidence, curated) 0 green (experimental evidence, uncurated) 16. Dipeptide Een dipeptide is een molecuul dat bestaat uit twee aminozuren. Deze twee aminozuren zijn met elkaar verbonden door middel van een enkele peptidebinding. Dipeptides kunnen ontstaan uit polypeptides door de werking van het hydrolase-enzym dipeptidylpeptidase. Voedingsstoffen worden verteerd tot aminozuren en dipeptides en daarna opgenomen Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide‐binding protein W. N. Abouhama

ATP + H2O + a dipeptide-[dipeptide-binding protein][side 1] = ADP + phosphate + a dipeptide[side 2] + [dipeptide-binding protein][side 1]--Product in Enzyme-catalyzed Reactions (15 results) top print hide EC NUMBER . REACTION . REACTION DIAGRAM. LITERATURE . ENZYME 3D STRUCTURE . 7.4.2.9. ATP + H2O + a dipeptide. Handle.net. http://hdl.handle.net/11370/33584d40-7388-4786-a23a-d3dd49cac6b

RERE - Wikipedia

Rcsb Pdb - 1dpe: Dipeptide-binding Protei

Protein Dipeptide-binding protein from c.94.1.1: Phosphate binding protein-like appears in SCOPe 2.06. SCOPe: Structural Classification of Proteins — extended. Release 2.07 (updated 2020-07-16, stable release March 2018) Reference: Fox NK, Brenner SE, Chandonia JM. 2014.. Herein, we report a rather simple strategy to enhance the anion binding ability of a dipeptide to achieve cell uptake and also protein delivery. Peptide 1, composed of only two synthetic amino acids with an artificial anion binding site in the side chains, has an overall molecular weight of only 630 Da and Sigma-Aldrich offers abstracts and full-text articles by [P Dunten, S L Mowbray]

All functional dipeptide groups are protected (other than those that are involved in creating the peptide bond of amino acids). 2. Carnosine has a metal-binding relationship and is used in the carnosine-zinc complex, which has been found to have membrane-stabilizing capabilities,. Ribosomal Binding and Dipeptide Formation by Misacylated tRNA phe s. Thomas G. Heckler, James R. Roesser, Cheng Xu, Pei in Chang, from the prototype substrate in that they contained 2'-or 3'-deoxyadenosine at the 3'-terminus failed to form dipeptide at all when L-phenylalanyl-tRNA Phe was the acceptor tRNA Protein binding of a DRPLA family through arginine-glutamic acid dipeptide repeats is enhanced by extended polyglutamine Hiroko Yanagisawa, In contrast, arginine-serine dipeptide repeats (RS repeats) are known to serve as a site for protein-protein interaction, which has been well studied on proteins consisting of spliceosomes

Sigma-Aldrich offers abstracts and full-text articles by [T G Heckler, J R Roesser, C Xu, P I Chang, S M Hecht] Dit aminozuur kan een condensatiereactie aangaan met een carboxylgroep van een ander aminozuur, hierdoor ontstaat een dipeptide, de binding heet een peptidebinding. Uiteraard kunnen ook meerdere molecuul aan elkaar komen, dan heet dit een polypeptide. Je hebt 3 soorten structuren van eiwitmoleculen

Dipeptide Binding in Water by a de Novo Designed

Dipeptides promote folding and peptide binding of MHC

The anchor peptide-mediated binding largely resists washing and rain (Fig. 1, 4, and 6) and seems not to impair photosynthetic activity (ESI, Fig. S3†). On soybean plants in the yard, the dipeptide binding to a major part also withstands heat, sunlight, and microbial degradation for at least 17 d Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system ATP-binding cassette (ABC) type transporter, characterized by the presence of two similar ATP-binding domains/proteins and two integral membrane domains/proteins. A bacterial enzyme that interacts with an extracytoplasmic substrate binding protein and mediates the uptake of di- and tripeptides Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system (By similarity) Dipeptide 4 containing two unnatural amino acids, a modified tyrosine and a phenanthridine derivative, was synthesized. Binding of the dipeptide to a series of polynucleotides including ct-DNA, poly A - poly U, poly (dAdT)2, poly dG - poly dC and poly (dGdC)2 was investigated by thermal denaturation experiments, fluorescence spectroscopy and circular dichroism

ATP + H2O + a dipeptide-[dipeptide-binding protein][side 1] = ADP + phosphate + a dipeptide[side 2] + [dipeptide-binding protein][side 1] top print hide Go to Systematic Name Search Please wait a moment until the data is sorted Pseudo-Dipeptide Bearing , -Difluoromethyl Ketone Moiety as Electrophilic Warhead with Activity against Coronaviruses Andrea Citarella 1,2, Davide Gentile 3, Antonio Rescifina 3, Anna Piperno 1, Barbara Mognetti 4, Giorgio Gribaudo 4, Maria Teresa Sciortino 1, Wolfgang Holzer 2, Vittorio Pace 2,5,* and Nicola Micale 1,* Citation: Citarella, A. Muramyl dipeptide binding Antibodies . Antibodies for proteins involved in muramyl dipeptide binding pathways; according to their Panther/Gene Ontology Classification. View more View less. Disclaimer. Clicking the images or links will redirect you to a website hosted by BenchSci that provides third-party scientific content. Neither. Structure Article Structural Dynamics of Zika Virus NS2B-NS3 Protease Binding to Dipeptide Inhibitors Yan Li,1,5 Zhenzhen Zhang,2,3,5 Wint Wint Phoo,2,3,4 Ying Ru Loh,1 Weiling Wang,1 Shuang Liu,1 Ming Wei Chen,2,3 Alvin W. Hung, 1Thomas H. Keller, Dahai Luo,2 ,3 * and CongBao Kang1 ,6 * 1Experimental Therapeutics Centre, Agency for Science, Technology and Research (A*STAR), 31 Biopolis way. This web site. PDBj; Yorodumi; PDB-4qfk; Cross-search

Tools and datasets for computing binding affinities of vancomycin to (modified) dipeptides that may be produced by vancomycin-resistant bacteria such as MRSA. SimTK: vancomycin dipeptide binding data: Document Hutten et al. show that arginine-rich dipeptide repeat proteins (DPRs) associated with the neurodegenerative diseases ALS and FTD bind directly to importins, promote their condensation, and interfere with importin function. Elevated importin levels can shield arginine-rich DPRs and suppress DPR-induced phase separation of TDP-43 and RNA This web site. PDBj; Yorodumi; PDB-1dpe; Cross-search Heme, a major iron source, is transported through the outer membrane of Gram-negative bacteria by specific heme/hemoprotein receptors and through the inner membrane by heme-specific, periplasmic, binding protein-dependent, ATP-binding cassette permeases. Escherichia coli K12 does not use exogenous heme, and no heme uptake genes have been identified Pure dipeptide-binding protein (DppA) from Escherichia coli was studied in a filter binding assay to determine its binding specificity. A substrate:DppA stoichiometry of 1:1 was found with both [14C]AlaAla and Ala[14C]Phe. Surprisingly, substrate binding did not vary over the pH range pH 3-9.5

Dipeptide en Enzym · Bekijk meer » Gastrine. Gastrine is een hormoon met als voornaamste doel het stimuleren van de maagzuurproductie. Nieuw!!: Dipeptide en Gastrine · Bekijk meer » Hydrolase. Een hydrolase is in de biochemie een enzym dat de hydrolyse van een chemische binding katalyseert. Nieuw!!: Dipeptide en Hydrolase · Bekijk meer Polystyrene surface-binding peptides (PSBPs) are useful as affinity tags to build a highly effective ELISA system. However, they are also a quite common type of target-unrelated peptides (TUPs) in the panning of phage-displayed random peptide library. As TUP, PSBP will mislead the analysis of panning results if not identified. Therefore, it is necessary to find a way to quickly and easily. Entries are automatically classified into predefined categories of interest, for example: related to cancer, have binding data available, etc, using a machine learning algorithm. The users are able to vote. Each vote is used to tag the entry and improve classification of other, untagged entries

Rcsb Pdb - 1dpp: Dipeptide Binding Protein Complex With

Novel dipeptide PG labelling strategy

From COMPARTMENTS Text-mining Protein Localization Evidence Scores. proteins co-occuring with the atp-binding cassette (abc) transporter complex, transmembrane substrate-binding Antibodies for proteins involved in muramyl dipeptide binding pathways, according to their Panther/Gene Ontology Classificatio muramyl dipeptide binding Gene Set. Dataset: GO Molecular Function Annotations: Category: structural or functional annotations Type: molecular function: Description: Interacting selectively and non-covalently, in a non-covalent manner, with muramyl dipeptide; muramyl dipeptide is derived from peptidoglycan. (Gene. The dipeptide binding protein DppA of SM9913 was overexpressed in Escherichia coli , and its cold adaptation characteristics were studied. The recombinant DppA of SM9913 ( Ps DppA) displayed the highest ligand-binding affinity at 15°C, whereas the recombinant DppA of E. coli ( Ec DppA) displayed the highest ligand-binding affinity at 35°C Crystal structure of the leucine‐rich repeat domain of the NOD‐like receptor NLRP1: Implications for binding of muramyl dipeptide Thomas F. Reubold Institute for Biophysical Chemistry, Hannover Medical School, Carl-Neuberg-Strasse 1, 30625 Hannover, German

Systematic search for structural motifs of peptide binding

The first gene in the operon, dppA, encodes a periplasmic dipeptide-binding protein (DBP) required for dipeptide transport and chemotaxis. Downstream of dppA are other genes required for transport but not for chemotaxis. The dipeptide-binding protein was found to share 26.5% sequence identity with the periplasmic oligopeptide-binding protein OppA modification in the binding pocket of DppA gave significant effect on its binding properties with clear differences visualized via heat outputs generated upon the binding process. This highlights the importance of particular amino residues in the wt-DppA binding site in controlling the binding preference between each dipeptide species

Schematic representation of the renin–angiotensin

Dipeptide binding to the extended active site of the

3d structure of 4qfk_h - crystal structure of dipeptide binding protein from pseudoalteromonas sp. sm9913 - 4qfk | cansa Dipeptide repeat protein inclusions are rare in the spinal cord and almost absent from motor neurons in C9ORF72 mutant amyotrophic lateral sclerosis and are unlikely to cause their degeneration. which can sequester RNA binding proteins potentially leading to defective RNA processing

Binding Peptide - an overview ScienceDirect Topic

Expansion of a hexanucleotide (GGGGCC) repeat in the gene chromosome 9 open reading frame 72 (C9ORF72) is the most common cause of amyotrophic lateral sclerosis and frontotemporal dementia (FTD). Three non-exclusive mechanisms have been proposed to contribute to the pathology initiated by this genetic insult. First, it was suggested that decreased expression of the C9orf72 protein product may. Muramyl dipeptide is a glycopeptide that is N-propionyl-L-alanyl-D-alpha-glutamine in which the pro-R hydrogen of the propionyl group has been replaced by the oxygen at position 3 of 2-acetamido-2-deoxy-beta-D-glucopyranose.A peptidoglycan constituent of both Gram-positive and Gram-negative bacteria. It has a role as an immunological adjuvant Frontotemporal lobar degeneration (FTLD) is heterogeneous in clinical presentation, neuropathological characteristics and genetics. An expanded GGGGCC hexanucleotide repeat in C9ORF72 is the most common genetic cause of both FTLD and motor neuron disease (MND). Dipeptide repeat polymers (DPR) are generated through repeat-associated non-ATG translation, and they aggregate in neuronal inclusions. Eindexamen scheikunde havo 2011 - I 1p 5 Geef de naam van het type binding tussen de Si atomen en de O atomen in silicagel. Uit de afbeelding kan worden afgeleid dat bij het binden van water, behalve de vanderwaalsbinding, ook een ander type binding een rol speelt In canonical translation the cap binding protein eIF4E is part of a larger complex called eIF4F, which also contains the platform protein eIF4G and the RNA helicase eIF4A 34 (Fig. 2d)

Exploring the binding conformations of bulkier dipeptide amide inhibitors in constitutive nitric oxide synthases Huiying Li, Mack L. Flinspach, Jotaro Igarashi, Joumana Jamal, Weiping Yang, José Antonio Gómez-Vidal, Elizabeth A. Litzinger, Hui Huang, Erik P. Erdal, Richard B. Silverman , Thomas L. Poulos The product of the fifth gene, DciAE, is similar to peptide-binding proteins from Escherichia coli and Salmonella typhimurium (DppA and OppA) and B. subtilis (OppA). A null mutation in dciAE abolished the ability of a proline auxotroph to grow in a medium containing the dipeptide Pro-Gly as sole proline source, suggesting that the dciA operon encodes a dipeptide transport system

Repeat expansion mutations in the C9ORF72 gene are the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Repeat-associated non-AUG translation of this expansion produces dipeptide repeat proteins (DRPs). The arginine containing DRPs, polyGR and polyPR, are consistently reported to be the most toxic C9orf72 arginine-rich dipeptide repeat proteins disrupt karyopherin-mediated nuclear import. Lindsey R Hayes , Lauren Duan, Kelly Bowen, Petr Kalab , The C-terminal NLS-binding site of free importins α is autoinhibited by the N-terminal importin β-binding domain (IBB), and unmasked upon binding to importin β,. UNII-38H206R00R. Dipeptide diaminobutyroyl benzylamide diacetate. 823202-99-9. 38H206R00R. Syn-ak The dipeptide binding protein DppA of SM9913 was overexpressed in Escherichia coli, and its cold adaptation characteristics were studied. The recombinant DppA of SM9913 (PsDppA) displayed the highest ligand-binding affinity at 15°C, whereas the recombinant DppA of E. coli (EcDppA) displayed the highest ligand-binding affinity at 35°C Peptide Binding Protein: Released: 2014-05-21: Resolution: 2.290: CATH Insert Date: 28 Jun, 2015: PDB Images (33) 4qfk. PDB 4qfk 4qfkA. PDB Chain 4qfkA 4qfkB. PDB Chain 4qfkB 4qfkC. PDB Chain 4qfkC 4qfkD. PDB Chain 4qfkD 4qfkE. PDB Chain 4qfkE 4qfkF. PDB Chain 4qfkF 4qfkG. PDB Chain 4qfkG 4qfkH. PDB Chain 4qfk

Hoofdstuk 5 2008The pathways and mechanisms of muramyl dipeptide

Dipeptide repeats translated from these toxic transcripts also aggregate and wreak havoc in neurons (for review, see Gendron and Petrucelli, 2017). Animal studies have indicated that both toxic entities can be taken down using antisense oligonucleotides (ASO) aimed at the expansions ( Apr 2016 news ), a strategy that has already found success in a recent trial for spinal muscular atrophy ( Nov. Binding of NOD2 to muramyl dipeptide and homo-oligomerization of NOD2 are enhanced by ATP binding, suggesting a model of the molecular mechanism for signal transduction that involves binding of nucleotide followed by binding of muramyl dipeptide and oligomerization of NOD2 into a signaling complex

Novel, dipeptide hydroxamic acids, L-Ala-L-AlaN(Me)OH and L-Ala-L-SerN(Me)OH, as well as the corresponding Z-protected ones, Z-L-Ala-L-AlaN(Me)OH and Z-L-Ala-L-SerN(Me)OH (Z = benzyloxycarbonyl) were synthesized and the metal ion binding capabilities toward Fe(III), Al(III), Ni(II), Cu(II) and Zn(II) were studied by combined pH-potentiometric and spectroscopic (UV-VIS, EPR) methods in aqueous. The ENDOR approach is then applied to the binding of isoform-selective and non-selective nitroarginine inhibitors. Recently, we reported a family of N(ω)-nitroarginine-containing dipeptide amides as highly selective inhibitors of nNOS (Huang, H. et al. J. Med. Chem. 1999, 42, 3147-3153) A new dipeptide N 2-methylaurantiamide acetate was isolated from the fraction along with two peptide derivatives and four phenolic compounds. Molecular docking analysis demonstrated that N 2-methylaurantiamide acetate could fit tightly into the BH3-binding groove of anti-apoptotic protein Bcl-2 P23847 Periplasmic dipeptide transport protein . Chain(s) 1DPP_A (1dpp A protein 507 DIPEPTIDE BINDING PROTEIN) Best SwissProt Hit: P23847 (sp|P23847|DPPA_ECOLI Periplasmic dipeptide transport protein OS=Escherichia coli (strain K12) OX=83333 GN=dppA PE=1 SV=1) E-Value:

In the September 2 Science Translational Medicine, researchers led by Leonard Petrucelli and Yong-Jie Zhang at the Mayo Clinic in Jacksonville, Florida, and James Shorter at the University of Pennsylvania, Philadelphia, lay the blame on the dipeptide repeat protein poly-glycine-arginine (GR), which results from aberrant translation of C9ORF72 repeat expansion transcripts Aspartame is made from two amino acids: aspartic acid (tasteless) and phenylalanine (bitter) that give a sweet compound as the dipeptide. It is metabolized like other peptides and proteins in the body but it has far fewer calories than sugars. Back Compass Tables Index Introduction Homewor Component of: dipeptide ABC transporter (extended summary available) Summary: DppF is an ATP-binding component of the dipeptide ABC transporter. Locations: cytosol, inner membrane . Map Position: [3,699,887 - 3,700,891] Molecular Weight of Polypeptide: 37.56 kD (from nucleotide sequence). This page was last modified 23:31, 5 June 2019. This page has been accessed 758 times. User-added text is available under Proteopedia:Terms of Service and the CC-BY. Binding mode of carnosine with the fibril structure of Aβ1-42 (PDB Acc. no. 2BEG) was obtained using Autodock Vina and visualized by UCSF Chimera software. ( A ) The carnosine dipeptide interacts with the fibril monomer of Aβ1-42 at the level of the coiled region between the two β-sheet portions of the Aβ1-42 peptide

NOD1 - Wikipedia

Made available by U.S. Department of Energy Office of Scientific and Technical Information. dipeptide transport system substrate-binding protein: Organism: ecj Escherichia coli K-12 W3110. Pathway: ecj02010 : ABC transporters: ecj02030 : Bacterial chemotaxis: Brite: KEGG Orthology (KO) [BR:ecj00001] 09130 Environmental Information Processing 09131 Membrane transport 02010 ABC transporter that become toxic by sequestering RNA-binding proteins, and a gain of toxic function following the translation of aberrant polypeptide species [2]. (PA), dipeptide repeat protein consisting of proline-alanine dipeptide repeats; poly(PR), dipeptide repeat protein consisting of proline-arginine dipeptide repeats; RAN, repeat Dipeptide-4 * Please be kindly noted that our product can only be used for research to organizations or companies and not intended for individuals. CAT# CPC1646. CAS No. 24587-41-5. Explanation. Dipeptide-4 is a synthetic dipeptide consisting of cysteine and glycine. It is an antioxidant oligopeptide Divalent metal-ion complexes with dipeptide ligands having Phe and His side-chain anchors: effects of sequence, metal ion whereby the weakly binding metal ions (Ba2+ to Ca2+) transition from carboxylate zwitterion (ZW) binding to charge-solvated (CS) binding, while the stronger binding metal ions. muramyl dipeptide binding: Search Ontology: Synonyms: Definition: Interacting selectively and non-covalently, in a non-covalent manner, with muramyl dipeptide; muramyl dipeptide is derived from peptidoglycan. References: Ontology: GO: Molecular Function QuickGO AmiGO.

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